Bibdesk is just getting better! In version 1.3.4 they have included searching inside linked PDF files in the library. It is not as powerful as the AI search functionality in DevonThink, but it is still very, very useful.
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Hi Alexander, glad to see you like the content search! I actually added that feature to BibDesk in October of 2005, but it was buried in the search field menu. Part of the motivation for the new search interface was exposing that feature.